PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ47992.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 635aa    MW: 68226 Da    PI: 6.7346
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ47992.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-0798119426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 elC +fa  G C +Gd C+F+H+
  KXZ47992.1  98 ELCTNFAL-GRCTFGDGCRFSHD 119
                 8*******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.04794121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-595119IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-495120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-597119IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-498119IPR000571Zinc finger, CCCH-type
SMARTSM0035654131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.024134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.705.9E-61270514IPR013785Aldolase-type TIM barrel
CDDcd028018.80E-75270510No hitNo description
SuperFamilySSF513955.49E-51270588No hitNo description
PfamPF012071.6E-44322516IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360356374IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002943Biological ProcesstRNA dihydrouridine synthesis
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MEPENQEEKN LLTAEQMLER NIVPVKAEYL VRKAPAHKRE QSQPAGAAEP AGAAPEAATE  60
GAAPGTANDK GRDKEKEQTK SKSRKQMRKD VRAGRPPELC TNFALGRCTF GDGCRFSHDL  120
AAYLRSKPAD LPGACPWAAL GVPCPYGVTC RYARKHTADD EQHRLLRETV PAPPEEPAAG  180
EGAEPSAPAS GGSPSGDADG GGSGGGLPSG PLPLPAPSSI EKETNFMSKE TQTQLWKNRY  240
DFSVADEILK NMGLRISFKH QPKPMPGGAR RVCKSLGVDV TCGEMALATE PPAGGGGWGS  300
GGWGGGAVGQ GQASEWALLK RHPCEDLFGV QVCGGFPDAL ARCGQLISES VSVDFMDINM  360
GCPIDLVCDK SAGSALLRQP RRIEQIVRAT SAALGETPLT FKTRKGFNDG EDVAHTFLHK  420
AGEWGAAAVT LHGRTRQQRY SKLADWEYVK SCAGACSAAG LQLLGNGDVF SFTDWNEHMG  480
ESGNGLASLM IGRGALIKPW IFTEIKEQRH WDISASERLD LYRSFCSAGL EHWGSDGRGV  540
ETTRRFLLEW LSFTCRYVPV GLLEVLPQRM NHRPPTFVGR SDLETLLGSD DPQDWIRISE  600
MLLGPPPAPL SFAPKHKSSA YGPPGAASEL DMARG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vhn_A1e-1632252555247putative flavin oxidoreductase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002951897.10.0hypothetical protein VOLCADRAFT_105302
TrEMBLA0A150GDS70.0A0A150GDS7_GONPE; Uncharacterized protein
STRINGEFJ304211e-170(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP58777